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3D Protein Alignment

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Author: ElcomSoft Co. Ltd.

If you have a PC with DOSor Windows 95/98/NTand want to compare 3Dstructures of proteins(in PDB format) thisprogram is for you. Theprogram does not need anysequence gomologyand any previous assumptionabout 3Dstructure similarities ofstarting proteins.The program can determineitself the degreeof 3D similarity. Theoutput are 3D coordinatesof second protein rotatedand shifted to thebest fitting to coordinatesof the firstprotein in PDB format. Youcan see andmanipulate stereoscopicimages of startingstructures and finalresult, using mirrorstereo-glasses. The secondkind output isthe linear representationof 3D alignmentand the list of structureconservativeregions that fit to givenRMS deviations.

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